Basic Information
Locus ID:
nbisL1-mrna-3045
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 6733952 | 6734629 | - | nbisL1-mrna-3045 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 24,941.98 Da | 58.88 | 92.27 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 73 | 115 | 9.42665E-16 | - |
| Pfam | PF13639 | Ring finger domain | 72 | 115 | 8.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 54 | 118 | 8.83E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 119 | 1.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 73 | 114 | 2.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 73 | 115 | 11.987676 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 225 | - | - |
| Coils | Coil | Coil | 190 | 210 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48030.2 | - | 0 |
| RefSeq | XP_003633831.2 | PREDICTED: RING-H2 finger protein ATL56-like [Vitis vinifera] | 0 |
| Q7X843 | RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2 | 0 | |
| TrEMBL | A0A438EFR3 | Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology