Basic Information
Locus ID:
nbisL1-mrna-3036
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Splicing factor 3B subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 2452444 | 2458018 | + | nbisL1-mrna-3036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 134,948.13 Da | 36.06 | 91.53 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03178 | CPSF A subunit region | 864 | 1183 | 1.9E-93 | IPR004871 |
| Pfam | PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term | 75 | 592 | 3.1E-169 | IPR018846 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 553 | 1017 | 2.2E-7 | IPR036322 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 39 | 631 | 9.42E-7 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 1128 | 6.0E-247 | IPR015943 |
| Gene3D | G3DSA:1.10.150.910 | - | 1135 | 1216 | 6.0E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 443 | 770 | 6.0E-247 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 404 | 6.0E-247 | IPR015943 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55200.1 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein. | 0 |
| RefSeq | XP_021679093.1 | spliceosome-associated protein 130 A [Hevea brasiliensis] | 0 |
| P0DKL4 | Spliceosome-associated protein 130 A OS=Arabidopsis thaliana OX=3702 GN=SAP130A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M5Z1 | Uncharacterized protein MANES_07G109100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6032 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12941 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah019408, Ah021817, Ah033412 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg20834, Sbi_jg22928, Sbi_jg9583, Sbi_jg9584 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16804, Seu_jg19055 |
| Amaranthaceae | Suaeda aralocaspica | 6 | GOSA_00009338, GOSA_00009339, GOSA_00009353, GOSA_00009354 ... |
| Amaranthaceae | Suaeda glauca | 14 | Sgl52637, Sgl52638, Sgl52644, Sgl52662, Sgl57928, Sgl57929 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017520, gene:ENSEOMG00000020834 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0011020, CQ.Regalona.r1.2BG0012400 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30172010 |
| Apiaceae | Apium graveolens | 2 | Ag10G01089, Ag2G00646 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G007760, contig69433177G000010 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_05.3583.V1.1, AsparagusV1_05.3584.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | FtriNA32957 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G55200.1, AT3G55220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006588m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g056860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0703 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0710 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g01910 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0114s00023.v1.0, Dusal.2612s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g11090 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4015 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1188 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023126 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37822, Lb0G37823, Lb1G04707 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.5132, BH01.5078, BH01.5268 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101090, gene-QOZ80_2BG0154490 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0556470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020222 |
| Poaceae | Oryza coarctata | 2 | Oco03G002100, Oco04G001940 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g04480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G032800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201560, Pt_Chr0201562 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G035170, Chr0G011980, Chr0G012280, Chr15G026520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G238500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG013870, gene_TRIDC6BG019280 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G107200.1, TraesCS6B02G135400.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb163410_P001, Zm00001eb163420_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29989, nbis-gene-33770 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12167, Zma_g14924 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2456, evm.TU.LG10.1583 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g04270 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1776 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3036, nbisL1-mrna-3132 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19162 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13928 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.239 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005438 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12794 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16406 |
| Salicaceae | Populus euphratica | 2 | populus_peu06371, populus_peu20198 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614423 |
| Solanaceae | Solanum chilense | 1 | SOLCI006428200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017738 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5776 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2781 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18440.v3.1 |