Basic Information
Locus ID:
nbisL1-mrna-30353
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
leucine-rich repeat protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 16571508 | 16573607 | + | nbisL1-mrna-30353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 38,437.48 Da | 31.84 | 105.95 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 2 | 109 | 4.8E-21 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 169 | 317 | 3.8E-22 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 195 | 315 | 2.73E-28 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 123 | 4.86E-29 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 190 | 1.5E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 191 | 330 | 8.4E-30 | - |
| SMART | SM00220 | serkin_6 | 93 | 324 | 8.5E-4 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 198 | 20.909145 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 20 | 32 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78530.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_042435793.1 | - | 0 |
| Q9SYM9 | Receptor-like serine/threonine-protein kinase At1g78530 OS=Arabidopsis thaliana OX=3702 GN=At1g78530 PE=2 SV=1 | 0 | |
| TrEMBL | A0A445BYY5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbisL1-mrna-30353.