HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: nbisL1-mrna-30265
Species & Taxonomic ID: Carallia pectinifolia & 98586
Genome Assembly: GCA_037832335.1
Description: Belongs to the protein kinase superfamily
Maps and Mapping Data
Chromosome Start End Strand ID
chr12 15604653 15610828 - nbisL1-mrna-30265
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.46 111,510.98 Da 37.71 100.28 -0.06
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00069 Protein kinase domain 43 311 1.4E-28 IPR000719
Pfam PF00069 Protein kinase domain 706 972 3.1E-30 IPR000719
Pfam PF00069 Protein kinase domain 378 583 5.4E-30 IPR000719
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 693 982 1.18E-56 IPR011009
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 363 656 8.28E-59 IPR011009
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 31 326 9.7E-58 IPR011009
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 782 985 2.5E-37 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 121 326 2.4E-35 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 451 654 1.2E-35 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 677 778 3.0E-26 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 14 118 5.0E-26 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 346 448 1.1E-26 -
ProSiteProfiles PS50011 Protein kinase domain profile. 373 647 27.509724 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 703 977 27.241177 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 41 318 27.509724 IPR000719
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G07870.1 Protein kinase superfamily protein. 0
RefSeq XP_002298384.2 - 0
Swiss-Prot Q9LQQ8 Probable serine/threonine-protein kinase PBL5 OS=Arabidopsis thaliana OX=3702 GN=PBL5 PE=2 SV=1 0
TrEMBL A0A7J9KV08 - 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-30263, nbisL1-mrna-30265
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.