Basic Information
Locus ID:
nbisL1-mrna-30234
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Glutelin type-A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 15315984 | 15318180 | + | nbisL1-mrna-30234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 38,523.80 Da | 25.35 | 89.19 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 353 | 3.79675E-75 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 173 | 5.45299E-70 | - |
| Pfam | PF00190 | Cupin | 199 | 337 | 1.2E-20 | IPR006045 |
| Pfam | PF00190 | Cupin | 10 | 157 | 3.3E-30 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 16 | 344 | 7.14E-48 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 4 | 194 | 2.3E-36 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 356 | 1.2E-48 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 195 | 339 | 7.7E-15 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 1.1E-33 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 5.6E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 5.6E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 5.6E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 5.6E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 5.6E-13 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_002531106.1 | glutelin type-D 1 [Ricinus communis] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N5LPG9 | 11S globulin OS=Salix brachista OX=2182728 GN=DKX38_012741 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology