Basic Information
Locus ID:
nbisL1-mrna-30231
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Glutelin type-A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 15297302 | 15299861 | + | nbisL1-mrna-30231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 39,287.51 Da | 45.51 | 83.14 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 52 | 95 | 9.92232E-17 | - |
| Pfam | PF13639 | Ring finger domain | 52 | 95 | 1.3E-9 | IPR001841 |
| Pfam | PF00190 | Cupin | 242 | 332 | 6.1E-11 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 242 | 349 | 1.05E-17 | IPR011051 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 146 | 218 | 1.14E-9 | IPR011051 |
| SUPERFAMILY | SSF57850 | RING/U-box | 41 | 100 | 3.53E-17 | - |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 136 | 218 | 2.3E-9 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 230 | 350 | 1.2E-32 | IPR014710 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 103 | 8.9E-19 | IPR013083 |
| SMART | SM00835 | Cupin_1_3 | 229 | 333 | 0.0089 | IPR006045 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 53 | 95 | 10.143551 | IPR001841 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 288 | 306 | 1.3E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 270 | 285 | 1.3E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 252 | 268 | 1.3E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 310 | 327 | 1.3E-7 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_002531106.1 | glutelin type-D 1 [Ricinus communis] | 0 |
| Q9SJJ7 | RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1 | 0 | |
| TrEMBL | B9SYN7 | Nutrient reservoir, putative OS=Ricinus communis OX=3988 GN=RCOM_0787760 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology