Basic Information
Locus ID:
nbisL1-mrna-30212
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
UBC13
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 15152645 | 15155266 | + | nbisL1-mrna-30212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 20,845.46 Da | 59.72 | 77.11 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 19 | 180 | 2.84287E-56 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 68 | 179 | 4.7E-37 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 9 | 50 | 6.6E-7 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 183 | 1.21E-53 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 187 | 7.0E-61 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 185 | 2.0E-63 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 185 | 51.229 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 99 | 114 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59300.1 | ubiquitin carrier protein 7. ubiquitin conjugating enzyme E2 | 0 |
| RefSeq | XP_021636675.1 | ubiquitin-conjugating enzyme E2 7 [Hevea brasiliensis] | 0 |
| Q42540 | Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana OX=3702 GN=UBC7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067L759 | UBC core domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_05684 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34241, jg9913 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_7018, gene_7019 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028066 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g174200, BVRB_7g174210 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1796, Sbi_jg1801, Sbi_jg34724, Sbi_jg34725 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2955, Seu_jg2959 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003167, GOSA_00003168 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl72992, Sgl72994, Sgl76531, Sgl76532 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004891, gene:ENSEOMG00000006623 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0002500, CQ.Regalona.r1.7AG0002510 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30060010, pistato.v30175170 |
| Apiaceae | Apium graveolens | 3 | Ag10G01130, Ag3G01390, Ag4G02587 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G002000, COCNU_12G007600, scaffold011719G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696704, gene-LOC103716521, gene-LOC103723024 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.158.V1.1, AsparagusV1_07.231.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri8G25790, Ftri9G03188 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G46460.1, AT3G55380.2, AT5G59300.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10002692m.g.v1.0, Thhalv10010846m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g07090.v2.2, Sp5g15220.v2.2, Sp6g20970.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g038860.2N, BniB06g056840.2N, BniB06g064940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0754, Ceq08G2212 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0764, Cgl08G2366 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g19620, gene.Cymno03g00470, gene.Cymno04g15200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0327s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g01050 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1606, evm.TU.LG09.1302 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027998, Pov_00040108 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb3G20068, Lb6G30393, Lb6G31674, Lb6G31675, Lb7G33179 ... |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3823, AH05.2146, BH02.3835, BH05.2278, BH07.4144 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0039350, gene-QOZ80_1BG0089370 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0073330.1, HORVU.MOREX.r3.3HG0302880.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014346, gene-QYE76_056256 |
| Poaceae | Oryza coarctata | 4 | Oco01G024500, Oco02G025370, Oco09G011500, Oco10G011250 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g62244.1, LOC_Os05g38550.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G330600, gene-BS78_09G168300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405691, Pt_Chr0504751 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G019150, Chr02G005110, Chr05G028280, Chr18G011270 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G462600, Tel3E01G572600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG042610, gene_TRIDC1BG048350 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G285200.1, TraesCS1B02G294400.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb148520_P002, Zm00001eb289700_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11458, nbis-gene-24145 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g27066, Zma_g28384, Zma_g8969 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1181, evm.TU.LG24.1184 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g34270, gene.Posoc02g01610, gene.Posoc07g14960 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60437.13, evm.TU.60438.14 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30212 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19672, nbisL1-mrna-21431, nbisL1-mrna-7662 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16194, nbisL1-mrna-19548, nbisL1-mrna-4521 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.957, evm.TU.utg000015l.481 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015300, Maker00017945 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2096, nbisL1-mrna-4399, nbisL1-mrna-5576 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11773, nbisL1-mrna-9467 |
| Salicaceae | Populus euphratica | 4 | populus_peu06413, populus_peu06414, populus_peu20251 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613744, gene-LOC132629842, gene-LOC132640189 |
| Solanaceae | Solanum chilense | 4 | SOLCI000909600, SOLCI001057400, SOLCI001057500 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107015546, gene-LOC107020903, gene-LOC107020904 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_5896, gene_9707 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G3165, TC06G0940 |
| Zosteraceae | Zostera marina | 2 | Zosma01g16520.v3.1, Zosma04g15230.v3.1 |