Basic Information
Locus ID:
nbisL1-mrna-30204
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 15071467 | 15076071 | + | nbisL1-mrna-30204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 72,381.04 Da | 45.36 | 96.38 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 262 | 304 | 7.54316E-28 | - |
| Pfam | PF04564 | U-box domain | 258 | 328 | 4.2E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 550 | 589 | 1.3E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 385 | 424 | 4.4E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 468 | 506 | 2.7E-7 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 334 | 2.52E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 356 | 637 | 6.53E-52 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 331 | 4.9E-31 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 115 | 2.1E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 495 | 652 | 1.1E-20 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 342 | 492 | 3.7E-36 | IPR011989 |
| SMART | SM00185 | arm_5 | 467 | 507 | 0.32 | IPR000225 |
| SMART | SM00185 | arm_5 | 385 | 425 | 1.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 591 | 631 | 160.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 549 | 589 | 23.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 261 | 324 | 4.6E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 508 | 548 | 29.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 426 | 466 | 0.2 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 396 | 438 | 12.5474 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 257 | 331 | 44.637169 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 519 | 561 | 9.2224 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 665 | - | - |
| Coils | Coil | Coil | 622 | 642 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_012065019.1 | U-box domain-containing protein 13 [Jatropha curcas] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LYH9 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology