Basic Information
Locus ID:
nbisL1-mrna-30186
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 14924766 | 14927793 | - | nbisL1-mrna-30186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 27,323.68 Da | 67.76 | 77.15 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 156 | 185 | 5.7E-9 | IPR001841 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 32 | 46 | 6.28E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 187 | 1.88E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 198 | 1.9E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 157 | 238 | 0.0092 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 130 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14320.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_021894478.1 | - | 0 |
| Q9LUL6 | Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5C7ICP6 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_008272 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology