halophFGD

Basic Information

Locus ID: nbisL1-mrna-30075

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: repressing transcription factor binding

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr12	14084182	14104860	-	nbisL1-mrna-30075

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.01	179,236.02 Da	45.16	80.44	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04301	NAT_SF	1357	1417	6.33797E-4	-
Pfam	PF16135	Tify domain binding domain	1087	1137	4.2E-23	IPR032308
Pfam	PF05641	Agenet domain	353	426	7.3E-10	IPR008395
Pfam	PF03171	2OG-Fe(II) oxygenase superfamily	204	297	1.6E-23	IPR044861
Pfam	PF14226	non-haem dioxygenase in morphine synthesis N-terminal	45	142	2.5E-12	IPR026992
SUPERFAMILY	SSF51197	Clavaminate synthase-like	40	321	2.33E-71	-
SUPERFAMILY	SSF55729	Acyl-CoA N-acyltransferases (Nat)	1347	1444	2.71E-7	IPR016181
Gene3D	G3DSA:2.60.120.330	-	10	325	5.3E-71	IPR027443
SMART	SM00743	agenet_At_2	433	490	2.1E-4	IPR014002
ProSiteProfiles	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	1301	1456	10.753397	IPR000182
ProSiteProfiles	PS51471	Fe(2+) 2-oxoglutarate dioxygenase domain profile.	195	297	12.659393	IPR005123
PRINTS	PR00682	Isopenicillin N synthase signature	58	75	1.5E-6	-
PRINTS	PR00682	Isopenicillin N synthase signature	257	283	1.5E-6	-
PRINTS	PR00682	Isopenicillin N synthase signature	222	243	1.5E-6	-
MobiDBLite	mobidb-lite	consensus disorder prediction	924	962	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	934	962	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	19	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	44	-	-

Gene Ontology

Molecular Function:

GO:0008080 (N-acetyltransferase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G58610.2	-
RefSeq	XP_052311785.1	uncharacterized protein LOC18102063 [Populus trichocarpa]
Swiss-Prot	Q7XP65	Gibberellin 2-beta-dioxygenase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=GA2OX6 PE=1 SV=1
TrEMBL	A0A3N7GYM3	PHD-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G072600 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg11167, jg12097, jg18123, jg37325, jg38023, jg38243, jg5736 ... jg38246
Aizoaceae	Mesembryanthemum crystallinum	6	gene_11862, gene_13568, gene_14913, gene_15543, gene_5775 ... gene_7506
Amaranthaceae	Atriplex hortensis	7	Ah004094, Ah005421, Ah007839, Ah020430, Ah025066, Ah027817 ... Ah039110
Amaranthaceae	Beta vulgaris	4	BVRB_4g078960, BVRB_4g086070, BVRB_5g119360, BVRB_7g171910
Amaranthaceae	Salicornia bigelovii	18	Sbi_jg1544, Sbi_jg17655, Sbi_jg19208, Sbi_jg19211, Sbi_jg603 ... Sbi_jg24241, Sbi_jg24631, Sbi_jg24632, Sbi_jg30726, Sbi_jg32953, Sbi_jg35001, Sbi_jg37619, Sbi_jg5162, Sbi_jg58538, Sbi_jg62333, Sbi_jg6953, Sbi_jg8067, Sbi_jg8493
Amaranthaceae	Salicornia europaea	7	Seu_jg11955, Seu_jg13120, Seu_jg20100, Seu_jg28410 ... Seu_jg3199, Seu_jg5463, Seu_jg903
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00003387, GOSA_00003919, GOSA_00004974, GOSA_00006758 ... GOSA_00007324, GOSA_00014688
Amaranthaceae	Suaeda glauca	20	Sgl00118, Sgl00304, Sgl05186, Sgl05360, Sgl23290, Sgl24028 ... Sgl28358, Sgl29210, Sgl42847, Sgl47606, Sgl47627, Sgl52475, Sgl55020, Sgl55021, Sgl57791, Sgl60276, Sgl72815, Sgl73910, Sgl76354, Sgl77418
Amaranthaceae	Chenopodium album	16	gene:ENSEOMG00000006464, gene:ENSEOMG00000008295 ... gene:ENSEOMG00000009295, gene:ENSEOMG00000011409, gene:ENSEOMG00000012907, gene:ENSEOMG00000013038, gene:ENSEOMG00000029708, gene:ENSEOMG00000030378, gene:ENSEOMG00000031511, gene:ENSEOMG00000034781, gene:ENSEOMG00000038662, gene:ENSEOMG00000041406, gene:ENSEOMG00000041486, gene:ENSEOMG00000042276, gene:ENSEOMG00000044819, gene:ENSEOMG00000047889
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1AG0016610, CQ.Regalona.r1.3AG0015120 ... CQ.Regalona.r1.3BG0014870, CQ.Regalona.r1.4AG0005420, CQ.Regalona.r1.4AG0018470, CQ.Regalona.r1.4BG0005400, CQ.Regalona.r1.4BG0018970, CQ.Regalona.r1.7AG0004650, CQ.Regalona.r1.9BG0001120
Anacardiaceae	Pistacia vera	10	pistato.v30027010, pistato.v30061250, pistato.v30065120 ... pistato.v30142120, pistato.v30162230, pistato.v30201530, pistato.v30221910, pistato.v30221920, pistato.v30236800, pistato.v30257940
Apiaceae	Apium graveolens	11	Ag10G01832, Ag11G03179, Ag1G00718, Ag2G00010, Ag2G02388 ... Ag5G02500, Ag6G02123, Ag7G00171, Ag8G01596, AgUnG00041, AgUnG01134
Arecaceae	Cocos nucifera	10	COCNU_01G019830, COCNU_02G010250, COCNU_03G000910 ... COCNU_04G003330, COCNU_04G013880, COCNU_04G013890, COCNU_06G020780, COCNU_06G020790, COCNU_11G004140, COCNU_15G002770
Arecaceae	Phoenix dactylifera	8	gene-LOC103702645, gene-LOC103703136, gene-LOC103711112 ... gene-LOC103712121, gene-LOC103712566, gene-LOC103713918, gene-LOC103714273, gene-LOC113462352
Asparagaceae	Asparagus officinalis	7	AsparagusV1_02.277.V1.1, AsparagusV1_03.505.V1.1 ... AsparagusV1_04.2575.V1.1, AsparagusV1_07.687.V1.1, AsparagusV1_08.3414.V1.1, AsparagusV1_09.113.V1.1, AsparagusV1_09.720.V1.1
Asteraceae	Flaveria trinervia	11	Ftri10G02498, Ftri11G31764, Ftri12G04929, Ftri15G26266 ... Ftri15G32066, Ftri3G20401, Ftri3G21382, Ftri4G00552, Ftri4G03364, Ftri7G11657, Ftri7G17336
Brassicaceae	Arabidopsis thaliana	7	AT1G05380.1, AT3G14980.1, AT4G14920.1, AT5G36670.1 ... AT5G36740.1, AT5G58610.1, AT5G63900.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10003533m.g.v1.0, Thhalv10005427m.g.v1.0 ... Thhalv10009713m.g.v1.0, Thhalv10012519m.g.v1.0, Thhalv10019928m.g.v1.0, Thhalv10024261m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g04250.v2.2, Sp1g04260.v2.2, Sp2g26960.v2.2 ... Sp3g13180.v2.2, Sp7g05750.v2.2, Sp7g13060.v2.2
Brassicaceae	Brassica nigra	9	BniB01g031240.2N, BniB01g050070.2N, BniB02g038050.2N ... BniB03g035670.2N, BniB05g021200.2N, BniB06g012150.2N, BniB06g045180.2N, BniB07g042580.2N, BniB07g042590.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq01G0926, Ceq06G2101, Ceq08G1857, Ceq09G1347
Casuarinaceae	Casuarina glauca	4	Cgl01G1044, Cgl06G2214, Cgl08G1914, Cgl09G1437
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g16630, gene.Cymno05g00760, gene.Cymno11g05670
Dunaliellaceae	Dunaliella salina	3	Dusal.0280s00011.v1.0, Dusal.0330s00008.v1.0 ... Dusal.0545s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate01g32540, gene.Thate02g15400, gene.Thate02g18280 ... gene.Thate02g40320, gene.Thate06g02510, gene.Thate08g10540, gene.Thate09g01410
Malvaceae	Hibiscus hamabo Siebold & Zucc.	9	nbisL1-mrna-12073, nbisL1-mrna-12074, nbisL1-mrna-4976 ... nbisL1-mrna-5209, nbisL1-mrna-5970, nbisL1-mrna-8299, nbisL1-mrna-8816, nbisL1-mrna-8817, nbisL1-mrna-8818
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.1987, evm.TU.LG02.739, evm.TU.LG04.1088 ... evm.TU.LG05.1493, evm.TU.LG10.593, evm.TU.LG11.1039
Plantaginaceae	Plantago ovata	7	Pov_00016331, Pov_00017841, Pov_00021300, Pov_00021672 ... Pov_00023406, Pov_00025553, Pov_00027447
Plumbaginaceae	Limonium bicolor	10	Lb1G07236, Lb2G13764, Lb3G16391, Lb3G16396, Lb3G20470 ... Lb3G20492, Lb4G23836, Lb4G24783, Lb4G24784, Lb8G36683
Poaceae	Echinochloa crus-galli	21	AH01.3996, AH02.4621, AH03.361, AH03.4147, AH09.1034 ... AH09.2815, BH01.4382, BH01.744, BH02.4680, BH02.4681, BH03.432, BH09.1111, BH09.3047, CH01.4625, CH01.743, CH02.4734, CH03.509, CH07.23, CH09.1248, CH09.3221, Contig309.97
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0047840, gene-QOZ80_1BG0097670 ... gene-QOZ80_3AG0216250, gene-QOZ80_3BG0261560, gene-QOZ80_3BG0283930, gene-QOZ80_4AG0298270, gene-QOZ80_4BG0328940, gene-QOZ80_7AG0557450, gene-QOZ80_7AG0582790, gene-QOZ80_7BG0588310, gene-QOZ80_7BG0613920
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0108050.1, HORVU.MOREX.r3.2HG0147280.1 ... HORVU.MOREX.r3.2HG0169040.1, HORVU.MOREX.r3.2HG0217050.1, HORVU.MOREX.r3.3HG0308740.1, HORVU.MOREX.r3.3HG0325990.1, HORVU.MOREX.r3.4HG0384820.1, HORVU.MOREX.r3.5HG0510280.1
Poaceae	Lolium multiflorum	15	gene-QYE76_016649, gene-QYE76_030354, gene-QYE76_038533 ... gene-QYE76_038534, gene-QYE76_038536, gene-QYE76_038538, gene-QYE76_042725, gene-QYE76_042756, gene-QYE76_044071, gene-QYE76_057590, gene-QYE76_057609, gene-QYE76_058641, gene-QYE76_058657, gene-QYE76_061885, gene-QYE76_068795
Poaceae	Oryza coarctata	9	Oco02G031850, Oco05G023490, Oco06G024390, Oco07G006180 ... Oco07G020080, Oco08G006120, Oco08G019450, Oco13G002290, Oco14G002510
Poaceae	Oryza sativa	6	LOC_Os01g73480.1, LOC_Os03g53630.1, LOC_Os04g35430.1 ... LOC_Os04g59510.1, LOC_Os07g07690.1, LOC_Os07g49290.1
Poaceae	Paspalum vaginatum	8	gene-BS78_01G082300, gene-BS78_01G389600 ... gene-BS78_02G048300, gene-BS78_03G296300, gene-BS78_06G026800, gene-BS78_06G100000, gene-BS78_06G295400, gene-BS78_07G006100
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0105088, Pt_Chr0106318, Pt_Chr0303648, Pt_Chr0306880 ... Pt_Chr0600941, Pt_Chr0600942
Poaceae	Sporobolus alterniflorus	26	Chr01G005330, Chr01G031980, Chr04G008660, Chr04G028510 ... Chr05G034380, Chr07G003030, Chr07G023110, Chr07G027480, Chr12G007610, Chr12G037730, Chr14G009500, Chr19G017350, Chr20G013920, Chr21G009600, Chr23G000150, Chr23G012850, Chr24G000650, Chr25G011070, Chr26G006700, Chr26G019050, Chr27G017610, Chr28G001660, Chr29G000410, Chr29G013000, Chr29G013010, Chr29G013020
Poaceae	Thinopyrum elongatum	10	Tel2E01G1045900, Tel2E01G183800, Tel2E01G441900 ... Tel2E01G538000, Tel2E01G538100, Tel3E01G857000, Tel3E01G857100, Tel4E01G346700, Tel5E01G035000, Tel5E01G614600
Poaceae	Triticum dicoccoides	16	gene_TRIDC2AG009430, gene_TRIDC2AG032010 ... gene_TRIDC2AG044280, gene_TRIDC2AG044310, gene_TRIDC2AG082150, gene_TRIDC2BG025930, gene_TRIDC2BG036190, gene_TRIDC2BG046990, gene_TRIDC2BG047000, gene_TRIDC2BG091180, gene_TRIDC3BG066470, gene_TRIDC4AG015160, gene_TRIDC4AG015170, gene_TRIDC4BG033800, gene_TRIDC5AG056450, gene_TRIDC5BG060480
Poaceae	Triticum aestivum	23	TraesCS2A02G085100.1, TraesCS2A02G235700.1 ... TraesCS2A02G305000.1, TraesCS2A02G563500.2, TraesCS2B02G099800.1, TraesCS2B02G257600.3, TraesCS2B02G321800.1, TraesCS2B02G622700.1, TraesCS2D02G083000.1, TraesCS2D02G238100.1, TraesCS2D02G303600.2, TraesCS2D02G571900.2, TraesCS3A02G416700.1, TraesCS3A02G514100.1, TraesCS3B02G451700.2, TraesCS3B02G582800.1, TraesCS3D02G412200.1, TraesCS4A02G109600.1, TraesCS4B02G194600.1, TraesCS4D02G195300.1, TraesCS5A02G386300.1, TraesCS5B02G391200.1, TraesCS5D02G396100.1
Poaceae	Zea mays	10	Zm00001eb013420_P004, Zm00001eb057140_P001 ... Zm00001eb082620_P002, Zm00001eb140130_P001, Zm00001eb214970_P003, Zm00001eb282220_P001, Zm00001eb301070_P001, Zm00001eb367460_P001, Zm00001eb367470_P001, Zm00001eb434470_P001
Poaceae	Zoysia japonica	6	nbis-gene-16139, nbis-gene-23280, nbis-gene-26865 ... nbis-gene-26867, nbis-gene-28083, nbis-gene-37827
Poaceae	Zoysia macrostachya	7	Zma_g11995, Zma_g19718, Zma_g20750, Zma_g2806, Zma_g3841 ... Zma_g489, Zma_g6057
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.2344, evm.TU.LG02.777, evm.TU.LG03.1777 ... evm.TU.LG04.3197, evm.TU.LG06.1743, evm.TU.LG08.1221, evm.TU.LG09.1950, evm.TU.LG11.1095, evm.TU.LG14.1514, evm.TU.LG14.99, evm.TU.LG16.407, evm.TU.LG19.1060, evm.TU.LG22.131, evm.TU.LG24.1064
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g01910, gene.Posoc01g36870, gene.Posoc04g12680 ... gene.Posoc05g21530, gene.Posoc07g09880
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_12_RagTag.116, evm.TU.Scaffold_14_RagTag.939 ... evm.TU.Scaffold_16_RagTag.853, evm.TU.Scaffold_3_RagTag.443, evm.TU.Scaffold_6_RagTag.2122, evm.TU.Scaffold_6_RagTag.743, evm.TU.Scaffold_9_RagTag.120
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-1478, nbisL1-mrna-15951, nbisL1-mrna-17008 ... nbisL1-mrna-17878, nbisL1-mrna-21288, nbisL1-mrna-21771, nbisL1-mrna-21794, nbisL1-mrna-30075, nbisL1-mrna-9256
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-13358, nbisL1-mrna-15477, nbisL1-mrna-15670 ... nbisL1-mrna-16793, nbisL1-mrna-19895, nbisL1-mrna-2761, nbisL1-mrna-6493
Rhizophoraceae	Ceriops zippeliana	11	nbisL1-mrna-11700, nbisL1-mrna-11701, nbisL1-mrna-11702 ... nbisL1-mrna-16305, nbisL1-mrna-17245, nbisL1-mrna-18387, nbisL1-mrna-19427, nbisL1-mrna-19428, nbisL1-mrna-6171, nbisL1-mrna-620, nbisL1-mrna-7567
Rhizophoraceae	Kandelia candel	9	add.evm.TU.utg000011l.539, evm.TU.utg000003l.519 ... evm.TU.utg000003l.90, evm.TU.utg000011l.450, evm.TU.utg000015l.556, evm.TU.utg000019l.955, evm.TU.utg000022l.66, evm.TU.utg000025l.113, evm.TU.utg000027l.497
Rhizophoraceae	Kandelia obovata	5	Maker00007335, Maker00009855, Maker00012927, Maker00015302 ... Maker00017634
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-15319, nbisL1-mrna-18917, nbisL1-mrna-20183 ... nbisL1-mrna-23061, nbisL1-mrna-4462, nbisL1-mrna-63, nbisL1-mrna-6355, nbisL1-mrna-6722
Rhizophoraceae	Rhizophora mangle	9	nbisL1-mrna-10294, nbisL1-mrna-11650, nbisL1-mrna-2126 ... nbisL1-mrna-21663, nbisL1-mrna-2993, nbisL1-mrna-3469, nbisL1-mrna-5131, nbisL1-mrna-9159, nbisL1-mrna-9161
Salicaceae	Populus euphratica	10	populus_peu00585, populus_peu03049, populus_peu07380 ... populus_peu15055, populus_peu21384, populus_peu32058, populus_peu32718, populus_peu32719, populus_peu36058, populus_peu36059
Solanaceae	Lycium barbarum	6	gene-LOC132606277, gene-LOC132610879, gene-LOC132610929 ... gene-LOC132616835, gene-LOC132618192, gene-LOC132630954
Solanaceae	Solanum chilense	6	SOLCI000977900, SOLCI001721600, SOLCI002469800 ... SOLCI003102600, SOLCI004743900, SOLCI006097100
Solanaceae	Solanum pennellii	8	gene-LOC107012432, gene-LOC107014957, gene-LOC107023319 ... gene-LOC107025939, gene-LOC107028255, gene-LOC107031317, gene-LOC107031373, gene-LOC107031410
Tamaricaceae	Reaumuria soongarica	8	MSTRG.6890_chr04_-, STRG.16833_chr09_-, STRG.175_chr01_+ ... STRG.20421_chr09_+, STRG.21988_chr08_+, STRG.4031_chr02_-, gene_3003, gene_7201
Tamaricaceae	Tamarix chinensis	8	TC01G0796, TC02G2221, TC05G2155, TC07G2672, TC07G2674 ... TC07G2675, TC11G1221, TC12G1376
Zosteraceae	Zostera marina	2	Zosma01g42460.v3.1, Zosma02g16670.v3.1