Basic Information
Locus ID:
nbisL1-mrna-30026
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 13678568 | 13679074 | + | nbisL1-mrna-30026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 15,916.99 Da | 26.86 | 80.44 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021653372.1 | E3 ubiquitin-protein ligase RNF181 homolog isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A8T1NPN5 | RING-type domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_13G151900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1857 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001239 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51942, Sgl57235 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.995 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30026 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11142 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16358, nbisL1-mrna-19379 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.250 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015563, Maker00018053 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18522, nbisL1-mrna-18902 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11609, nbisL1-mrna-20799 |
| Salicaceae | Populus euphratica | 1 | populus_peu36050 |