Basic Information
Locus ID:
nbisL1-mrna-3001
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Domain of unknown function (DUF569)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 6485012 | 6488467 | - | nbisL1-mrna-3001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 50,240.93 Da | 48.17 | 71.88 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 141 | 7.5E-60 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 144 | 284 | 6.5E-73 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 148 | 289 | 1.16E-23 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 5 | 130 | 1.96E-22 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 8 | 130 | 4.8E-17 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 150 | 267 | 3.3E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 340 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_024454864.2 | uncharacterized protein LOC7494585 isoform X1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A8T2Z0T7 | Actin cross-linking OS=Populus deltoides OX=3696 GN=H0E87_008488 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology