Basic Information
Locus ID:
nbisL1-mrna-29944
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 12875263 | 12877797 | + | nbisL1-mrna-29944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 54,823.80 Da | 44.11 | 106.21 | 0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 71 | 233 | 4.0E-31 | IPR005828 |
| Pfam | PF00083 | Sugar (and other) transporter | 360 | 491 | 9.2E-12 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 27 | 490 | 1.15E-67 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 30 | 494 | 2.0E-87 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 36 | 486 | 39.664062 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 362 | 378 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_043806599.1 | organic cation/carnitine transporter 7 isoform X2 [Manihot esculenta] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9UHH8 | MFS domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G000300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology