Basic Information
Locus ID:
nbisL1-mrna-29920
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 12567435 | 12578866 | + | nbisL1-mrna-29920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 155,166.17 Da | 49.63 | 75.94 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1252 | 1362 | 2.87456E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 651 | 983 | 4.85588E-83 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 1099 | 1136 | 4.4E-5 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1250 | 1352 | 4.6E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 673 | 1060 | 1.8E-65 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 991 | 1409 | 7.31E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1096 | 1145 | 4.99E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 637 | 983 | 1.54E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 746 | 832 | 9.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 869 | 995 | 2.0E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 623 | 711 | 1.3E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1080 | 1150 | 1.0E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 1152 | 1410 | 6.0E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 647 | 962 | 2.4E-30 | IPR014001 |
| SMART | SM00184 | ring_2 | 1099 | 1137 | 6.6E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1269 | 1352 | 3.6E-17 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1245 | 1405 | 15.169648 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 763 | 945 | 12.609076 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1099 | 1138 | 10.394352 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1114 | 1123 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 516 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 868 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 842 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021688826.1 | - | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KS41 | Uncharacterized protein LOC105649495 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology