Basic Information
Locus ID:
nbisL1-mrna-29864
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
FBD-associated F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 11522785 | 11550482 | + | nbisL1-mrna-29864 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 34,373.95 Da | 51.15 | 96.12 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61330.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_023926551.1 | putative FBD-associated F-box protein At1g61330 [Quercus suber] | 0 |
| O64787 | Putative FBD-associated F-box protein At1g61330 OS=Arabidopsis thaliana OX=3702 GN=At1g61330 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6A1UZN7 | F-box domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR7G027972 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20348 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_251, gene_252 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023931 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl45334, Sgl45751, Sgl45758, Sgl50116, Sgl50503 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000047140 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0004150 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723927 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G61320.1, AT1G61330.1 |
| Brassicaceae | Eutrema salsugineum | 11 | Thhalv10023802m.g.v1.0, Thhalv10023839m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g03170.v2.2, Sp2g04880.v2.2, Sp2g04890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g047300.2N |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.1033, evm.TU.LG12.1034 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026332 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.160, evm.TU.Scaffold_13_RagTag.162 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-29554, nbisL1-mrna-29559, nbisL1-mrna-29864 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2911, nbisL1-mrna-5623 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20859, nbisL1-mrna-20861 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.104, evm.TU.utg000015l.106 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19138 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16939 |
| Salicaceae | Populus euphratica | 2 | populus_peu10154, populus_peu18271 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132619690, gene-LOC132624591, gene-LOC132624592 |
| Solanaceae | Solanum chilense | 1 | SOLCI000110300 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6058 |