Basic Information
Locus ID:
nbisL1-mrna-29840
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 11097992 | 11099398 | - | nbisL1-mrna-29840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 7,092.19 Da | 24.47 | 116.77 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042972905.1 | - | 0 |
| TrEMBL | A0A5C7GPV7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21673 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah001861, Ah017648, Ah030750, Ah031846, Ah031859, Ah039403 |
| Amaranthaceae | Salicornia bigelovii | 26 | Sbi_jg12779, Sbi_jg15929, Sbi_jg21414, Sbi_jg22691 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3700, Seu_jg3701 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53448, Sgl58710 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046401 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112232 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G20980.1, AT3G21000.1 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g18980.v2.2, Sp3g19000.v2.2 |
| Brassicaceae | Brassica nigra | 10 | BniB01g028750.2N, BniB01g042720.2N, BniB05g058560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0702 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4280 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0529820 |
| Poaceae | Oryza coarctata | 1 | Oco24G009900 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G274800 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29840 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9792 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-22576, nbisL1-mrna-22910, nbisL1-mrna-2476 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132601344, gene-LOC132601735, gene-LOC132607958 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001288, gene-LOC107006700 |