Basic Information
Locus ID:
nbisL1-mrna-29830
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 10954739 | 10957911 | + | nbisL1-mrna-29830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 84,924.78 Da | 42.86 | 82.92 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 527 | 721 | 1.92944E-84 | - |
| CDD | cd00028 | B_lectin | 31 | 152 | 5.8152E-30 | IPR001480 |
| CDD | cd01098 | PAN_AP_plant | 337 | 415 | 1.19238E-13 | - |
| Pfam | PF01453 | D-mannose binding lectin | 74 | 178 | 4.3E-32 | IPR001480 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 525 | 722 | 3.8E-49 | IPR001245 |
| Pfam | PF00954 | S-locus glycoprotein domain | 220 | 313 | 2.4E-15 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 337 | 403 | 1.1E-15 | IPR003609 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 74 | 183 | 4.45E-26 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 501 | 730 | 1.09E-75 | IPR011009 |
| Gene3D | G3DSA:2.90.10.10 | - | 19 | 149 | 7.5E-21 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 494 | 596 | 2.7E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 597 | 747 | 3.2E-44 | - |
| SMART | SM00220 | serkin_6 | 521 | 750 | 6.0E-27 | IPR000719 |
| SMART | SM00108 | blect_4 | 31 | 152 | 2.1E-34 | IPR001480 |
| SMART | SM00473 | ntp_6 | 338 | 418 | 7.0E-4 | IPR003609 |
| PIRSF | PIRSF000641 | SRK | 1 | 746 | 7.4E-232 | IPR024171 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 337 | 419 | 8.792074 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 25 | 149 | 18.220623 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 521 | 750 | 38.322235 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 642 | 654 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 527 | 549 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_021668426.1 | - | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A2C9ULZ6 | Receptor-like serine/threonine-protein kinase OS=Manihot esculenta OX=3983 GN=MANES_14G166100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-29606, nbisL1-mrna-29829, nbisL1-mrna-29830 |