Basic Information
Locus ID:
nbisL1-mrna-29829
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 10938179 | 10945675 | - | nbisL1-mrna-29829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 47,830.92 Da | 49.05 | 76.49 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 219 | 297 | 4.59247E-12 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 329 | 397 | 1.3E-12 | IPR001245 |
| Pfam | PF00954 | S-locus glycoprotein domain | 103 | 195 | 1.4E-15 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 219 | 285 | 1.2E-15 | IPR003609 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 327 | 427 | 1.71E-23 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 303 | 384 | 7.4E-25 | - |
| SMART | SM00473 | ntp_6 | 220 | 300 | 4.4E-4 | IPR003609 |
| SMART | SM00219 | tyrkin_6 | 264 | 426 | 0.0015 | IPR020635 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 264 | 427 | 11.283893 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 219 | 301 | 8.691044 | IPR003609 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.2 | - | 0 |
| RefSeq | XP_020541042.1 | - | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A6A6LYC2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-29606, nbisL1-mrna-29829, nbisL1-mrna-29830 |