Basic Information
Locus ID:
nbisL1-mrna-2979
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
FH protein interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 1964549 | 1970336 | - | nbisL1-mrna-2979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 33,160.26 Da | 32.55 | 93.75 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02214 | BTB/POZ domain | 11 | 99 | 4.5E-18 | IPR003131 |
| Pfam | PF00805 | Pentapeptide repeats (8 copies) | 194 | 232 | 2.4E-9 | IPR001646 |
| Pfam | PF00805 | Pentapeptide repeats (8 copies) | 239 | 278 | 3.1E-14 | IPR001646 |
| Pfam | PF00805 | Pentapeptide repeats (8 copies) | 150 | 188 | 2.7E-8 | IPR001646 |
| SUPERFAMILY | SSF54695 | POZ domain | 9 | 105 | 2.75E-26 | IPR011333 |
| SUPERFAMILY | SSF141571 | Pentapeptide repeat-like | 134 | 296 | 2.26E-44 | - |
| Gene3D | G3DSA:2.160.20.80 | - | 120 | 301 | 1.3E-51 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 3 | 113 | 6.2E-31 | IPR011333 |
| SMART | SM00225 | BTB_4 | 9 | 111 | 2.5E-10 | IPR000210 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55000.1 | potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein. FH protein interacting protein FIP2 | 0 |
| RefSeq | XP_002525705.2 | FH protein interacting protein FIP2 isoform X1 [Ricinus communis] | 0 |
| Q9SE95 | FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LG16 | BTB/POZ domain-containing protein KCTD9 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31852, jg32768 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2358 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023943 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g009370 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015477, gene:ENSEOMG00000032748 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0011950, CQ.Regalona.r1.1BG0013990 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30087240, pistato.v30087660 |
| Apiaceae | Apium graveolens | 1 | AgUnG01418 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G000480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707040 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1690.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G17783 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G55000.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16940.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g015460.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1428 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1458 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00410 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0082s00025.v1.0, Dusal.0244s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22950 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2016 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003576 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25889 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4925, BH01.4857, BH01.5139 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0234250, gene-QOZ80_3BG0293750 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0401280.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070622 |
| Poaceae | Oryza coarctata | 3 | Oco05G003310, Oco06G003390, Oco20G004710 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g06160.1, LOC_Os10g30190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G475800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G036950, Chr12G002590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G459300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG004490, gene_TRIDC4BG047150 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G032800.2, TraesCS4B02G272500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb403220_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4448 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4388 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.480, evm.TU.LG26.557 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.440, evm.TU.Scaffold_2_RagTag.1809 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2979, nbisL1-mrna-3188, nbisL1-mrna-7737 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1529, nbisL1-mrna-16060 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13897, nbisL1-mrna-5473 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.210, evm.TU.utg000012l.267 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005836, Maker00011241 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12829, nbisL1-mrna-8529 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16372 |
| Salicaceae | Populus euphratica | 2 | populus_peu16113, populus_peu19354 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607619, gene-LOC132621794 |
| Solanaceae | Solanum chilense | 1 | SOLCI005394500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002199 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15920_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0703 |
| Zosteraceae | Zostera marina | 1 | Zosma05g33030.v3.1 |