Basic Information
Locus ID:
nbisL1-mrna-29680
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Ubiquitin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 9118254 | 9120815 | + | nbisL1-mrna-29680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 20,953.92 Da | 31.11 | 101.70 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 33 | 99 | 2.51007E-13 | - |
| Pfam | PF00240 | Ubiquitin family | 37 | 101 | 2.3E-9 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 19 | 102 | 1.57E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 17 | 103 | 4.0E-11 | - |
| SMART | SM00213 | ubq_7 | 28 | 102 | 0.0018 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 26 | 102 | 13.162439 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.102 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29680 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20810 |