halophFGD

Basic Information

Locus ID: nbisL1-mrna-2966

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: LEC14B protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	33512922	33514115	+	nbisL1-mrna-2966

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.56	10,136.56 Da	39.86	87.21	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	36	75	2.2E-7	IPR036322
Gene3D	G3DSA:2.130.10.10	-	10	81	7.3E-7	IPR015943
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	37	71	9.940341	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11801 (DDB1- and CUL4-associated factor 11)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G03020.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_039048445.1	LEC14B protein-like isoform X2 [Hibiscus syriacus]
Swiss-Prot	Q40153	LEC14B protein OS=Lithospermum erythrorhizon OX=34254 PE=2 SV=1
TrEMBL	A0A7J8P2Y8	WD_REPEATS_REGION domain-containing protein OS=Gossypium raimondii OX=29730 GN=Gorai_014362 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2966
Poaceae	Sporobolus alterniflorus	1	Chr15G017140
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG065010, gene_TRIDC5BG061510 ... gene_TRIDC6BG060750, gene_TRIDC7AG030980