Basic Information
Locus ID:
nbisL1-mrna-2964
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 33376984 | 33380281 | - | nbisL1-mrna-2964 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 65,710.14 Da | 53.12 | 91.66 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 8 | 47 | 1.2E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 66 | 112 | 6.4E-23 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 154 | 170 | 0.29 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 359 | 518 | 6.08E-15 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 27 | 405 | 4.91E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 577 | 1.4E-184 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 4.8E-24 | - |
| SMART | SM00367 | LRR_CC_2 | 129 | 154 | 64.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 314 | 337 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 432 | 455 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 372 | 396 | 0.29 | IPR006553 |
| SMART | SM00256 | fbox_2 | 9 | 50 | 8.2E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 481 | 505 | 35.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 104 | 128 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 155 | 192 | 51.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_039048323.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Hibiscus syriacus] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1S6R4L0 | Transport inhibitor response 1 OS=Hibiscus cannabinus OX=229543 GN=TIR1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology