Basic Information
Locus ID:
nbisL1-mrna-29606
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 8144509 | 8146551 | - | nbisL1-mrna-29606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 40,326.50 Da | 48.27 | 80.61 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 116 | 194 | 2.04576E-13 | - |
| Pfam | PF08276 | PAN-like domain | 116 | 182 | 3.7E-16 | IPR003609 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 213 | 353 | 4.2E-24 | IPR001245 |
| Pfam | PF00954 | S-locus glycoprotein domain | 2 | 92 | 2.2E-15 | IPR000858 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 161 | 359 | 3.11E-38 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 273 | 359 | 1.1E-23 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 194 | 270 | 2.3E-21 | - |
| SMART | SM00220 | serkin_6 | 161 | 357 | 0.0016 | IPR000719 |
| SMART | SM00473 | ntp_6 | 117 | 197 | 7.0E-4 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 161 | 359 | 24.018625 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 116 | 198 | 8.792074 | IPR003609 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 315 | 327 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.2 | - | 0 |
| RefSeq | XP_021638236.1 | - | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A6A6LYC2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-29606, nbisL1-mrna-29829, nbisL1-mrna-29830 |