Basic Information
Locus ID:
nbisL1-mrna-2960
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 33207597 | 33211020 | - | nbisL1-mrna-2960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 30,926.25 Da | 40.58 | 59.19 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 22 | 102 | 1.5E-19 | IPR008913 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 157 | 199 | 1.5E-6 | - |
| Pfam | PF14599 | Zinc-ribbon | 204 | 262 | 1.1E-25 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 19 | 91 | 4.84E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 204 | 8.43E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 93 | 150 | 5.36E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 224 | 1.6E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 229 | 267 | 2.7E-18 | - |
| SMART | SM00184 | ring_2 | 157 | 199 | 0.0023 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 15 | 90 | 24.747023 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 92 | 156 | 32.567333 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 199 | 11.338544 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_039048088.1 | E3 ubiquitin-protein ligase MIEL1 [Hibiscus syriacus] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2TW52 | E3 ubiquitin-protein ligase MIEL1-like OS=Gossypium mustelinum OX=34275 GN=E1A91_D08G087600v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology