Basic Information
Locus ID:
nbisL1-mrna-29578
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 7557795 | 7559093 | + | nbisL1-mrna-29578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 49,213.41 Da | 31.25 | 85.39 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 20 | 52 | 4.2E-8 | IPR001810 |
| Pfam | PF07734 | F-box associated | 245 | 414 | 1.0E-5 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 114 | 3.14E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 91 | 3.8E-8 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 2.5E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 125 | 375 | 4.3E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 60 | 10.583739 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021623918.1 | F-box protein At3g07870 [Manihot esculenta] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9VAC0 | F-box domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_09G122100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.149 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-10871, nbisL1-mrna-11178, nbisL1-mrna-29578 ... |