Basic Information
Locus ID:
nbisL1-mrna-29516
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 6622417 | 6637728 | - | nbisL1-mrna-29516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 152,520.81 Da | 48.35 | 77.55 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1156 | 1266 | 2.80378E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 547 | 879 | 4.39288E-83 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 569 | 956 | 2.1E-65 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1154 | 1256 | 4.5E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 887 | 1317 | 1.94E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 533 | 879 | 1.42E-45 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1007 | 1050 | 7.49E-7 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 643 | 728 | 9.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 769 | 891 | 2.0E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 519 | 607 | 1.3E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1075 | 1336 | 2.7E-57 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 976 | 1054 | 2.7E-7 | IPR013083 |
| SMART | SM00487 | ultradead3 | 543 | 858 | 4.7E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1173 | 1256 | 3.6E-17 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 995 | 1042 | 8.786275 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 659 | 841 | 12.609076 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1149 | 1309 | 15.169648 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1018 | 1027 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 738 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021688826.1 | - | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KS41 | Uncharacterized protein LOC105649495 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology