Basic Information
Locus ID:
nbisL1-mrna-2951
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 170796 | 176498 | + | nbisL1-mrna-2951 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 77,061.69 Da | 57.68 | 78.18 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 22 | 215 | 2.73682E-90 | - |
| Pfam | PF16124 | RecQ zinc-binding | 330 | 396 | 5.3E-12 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 37 | 195 | 3.7E-12 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 17 | 207 | 6.37E-32 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 214 | 419 | 8.22E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 215 | 3.5E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 414 | 3.3E-33 | IPR027417 |
| SMART | SM00487 | ultradead3 | 29 | 222 | 4.2E-19 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 23 | 276 | 2.9E-76 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 204 | 356 | 8.830872 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 41 | 208 | 19.638388 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 694 | - | - |
| Coils | Coil | Coil | 522 | 542 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_012065338.1 | - | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JLS8 | ATP-dependent DNA helicase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology