Basic Information
Locus ID:
nbisL1-mrna-29497
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 6161943 | 6170017 | - | nbisL1-mrna-29497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 107,040.03 Da | 56.20 | 78.42 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 297 | 413 | 1.71039E-19 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 725 | 760 | 1.1E-4 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 303 | 412 | 2.2E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 834 | 897 | 4.4E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 696 | 760 | 9.59E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 830 | 909 | 2.48E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 186 | 418 | 3.3E-17 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 184 | 431 | 8.4E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 691 | 767 | 1.2E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 827 | 907 | 1.2E-9 | - |
| SMART | SM00577 | forpap2 | 246 | 422 | 4.3E-17 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 697 | 761 | 4.0E-11 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 833 | 901 | 3.3E-7 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 832 | 902 | 12.790773 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 187 | 440 | 14.780648 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 696 | 762 | 12.596563 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 42 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021670439.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X5 [Hevea brasiliensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LPS0 | protein-serine/threonine phosphatase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology