Basic Information
Locus ID:
nbisL1-mrna-29479
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Monothiol
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 5787110 | 5789677 | - | nbisL1-mrna-29479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 50,356.51 Da | 34.15 | 79.98 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03028 | GRX_PICOT_like | 162 | 251 | 9.29554E-59 | IPR033658 |
| CDD | cd03028 | GRX_PICOT_like | 293 | 382 | 2.47569E-55 | IPR033658 |
| CDD | cd02984 | TRX_PICOT | 12 | 105 | 4.7507E-39 | - |
| CDD | cd03028 | GRX_PICOT_like | 364 | 458 | 4.83686E-47 | IPR033658 |
| Pfam | PF00462 | Glutaredoxin | 302 | 366 | 1.3E-16 | IPR002109 |
| Pfam | PF00462 | Glutaredoxin | 171 | 234 | 1.7E-16 | IPR002109 |
| Pfam | PF00462 | Glutaredoxin | 389 | 442 | 6.5E-14 | IPR002109 |
| Pfam | PF00085 | Thioredoxin | 11 | 105 | 1.1E-16 | IPR013766 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 3 | 104 | 4.86E-27 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 290 | 382 | 5.87E-29 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 384 | 462 | 2.95E-24 | IPR036249 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 159 | 259 | 6.99E-32 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 383 | 463 | 4.6E-30 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 161 | 260 | 3.9E-39 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 4 | 111 | 3.8E-28 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 292 | 382 | 5.2E-38 | - |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 291 | 382 | 1.8E-36 | IPR004480 |
| TIGRFAM | TIGR00365 | TIGR00365: monothiol glutaredoxin, Grx4 family | 160 | 254 | 4.0E-38 | IPR004480 |
| ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 1 | 109 | 9.662489 | IPR013766 |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 389 | 463 | 19.952997 | - |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 159 | 261 | 24.983639 | - |
| ProSiteProfiles | PS51354 | Glutaredoxin domain profile. | 290 | 392 | 24.429632 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 281 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04950.1 | thioredoxin family protein. | 0 |
| RefSeq | XP_021659284.1 | monothiol glutaredoxin-S17 [Hevea brasiliensis] | 0 |
| Q9ZPH2 | Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana OX=3702 GN=GRXS17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2Q3D7 | Glutaredoxin grx OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20297 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_332 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018012 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26163, Sbi_jg9960 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18758 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017023 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45912, Sgl50612 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009571, gene:ENSEOMG00000033137 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005070, CQ.Regalona.r1.8BG0005240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30088730 |
| Apiaceae | Apium graveolens | 2 | Ag10G00188, Ag7G00740 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012440 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712092 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.797.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G10092 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04950.1, AT4G32580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028614m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g038340.2N, BniB08g047350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2301 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2609 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01870 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1111s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g09450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.968 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005707 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24766, Lb5G29235, Lb5G29236 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1686, BH01.1885, CH01.1991 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0112660, gene-QOZ80_2BG0164590 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0047590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011838 |
| Poaceae | Oryza coarctata | 2 | Oco19G007310, Oco20G007220 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g35720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G186300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502820, Pt_Chr0502849 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030100, Chr09G002070, Chr15G021420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G309300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025750, gene_TRIDC1BG031290 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G168900.1, TraesCS1B02G188000.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb044380_P001, Zm00001eb091680_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45335 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12700 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1848, evm.TU.LG20.59 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.228 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23778, nbisL1-mrna-29479 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2411 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20906 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.139 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015797 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20944, nbisL1-mrna-5959 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16894, nbisL1-mrna-21914 |
| Salicaceae | Populus euphratica | 2 | populus_peu10075, populus_peu18197 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621496 |
| Solanaceae | Solanum chilense | 1 | SOLCI002556000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011553 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22300_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1283 |
| Zosteraceae | Zostera marina | 1 | Zosma05g24240.v3.1 |