Basic Information
Locus ID:
nbisL1-mrna-29477
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 5758586 | 5759986 | + | nbisL1-mrna-29477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 27,009.50 Da | 55.17 | 74.25 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 28 | 75 | 3.00046E-25 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 30 | 74 | 1.9E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 87 | 2.5E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 128 | 2.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 30 | 74 | 4.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 30 | 75 | 12.799091 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 45 | 54 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_012091596.1 | E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JC62 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology