Basic Information
Locus ID:
nbisL1-mrna-2944
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Endochitinase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002179F_pilon | 130540 | 131954 | + | nbisL1-mrna-2944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 34,598.27 Da | 37.69 | 61.09 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 21 | 59 | 1.02413E-16 | - |
| CDD | cd00325 | chitinase_GH19 | 85 | 313 | 3.48289E-110 | - |
| Pfam | PF00187 | Chitin recognition protein | 22 | 59 | 4.0E-14 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 84 | 313 | 3.9E-127 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 22 | 63 | 2.23E-13 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 81 | 319 | 7.87E-106 | IPR023346 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 167 | 222 | 3.2E-117 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 61 | 2.8E-16 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 89 | 319 | 3.2E-117 | - |
| SMART | SM00270 | ChitinBD_3 | 22 | 59 | 8.4E-18 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 320 | 6.8E-124 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 20 | 61 | 10.77644 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 102 | 124 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 226 | 236 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 45 | 52 | 6.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 38 | 6.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 45 | 6.9E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_015576332.2 | endochitinase [Ricinus communis] | 0 |
| P36907 | Endochitinase OS=Pisum sativum OX=3888 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6MFM2 | Chitin-binding type-1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_034832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology