Basic Information
Locus ID:
nbisL1-mrna-2934
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 6107832 | 6114802 | + | nbisL1-mrna-2934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 113,588.98 Da | 53.29 | 73.34 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07840 | STKc_CDK9_like | 719 | 1003 | 5.53305E-148 | - |
| Pfam | PF00069 | Protein kinase domain | 719 | 1003 | 5.0E-70 | IPR000719 |
| Pfam | PF03106 | WRKY DNA -binding domain | 249 | 305 | 1.2E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 433 | 490 | 2.8E-25 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 246 | 307 | 5.49E-26 | IPR036576 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 713 | 1010 | 1.48E-91 | IPR011009 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 424 | 492 | 2.75E-29 | IPR036576 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 710 | 801 | 1.0E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 802 | 1034 | 4.3E-70 | - |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 234 | 308 | 2.1E-28 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 417 | 493 | 2.1E-36 | IPR036576 |
| SMART | SM00220 | serkin_6 | 719 | 1003 | 1.6E-95 | IPR000719 |
| SMART | SM00774 | WRKY_cls | 248 | 306 | 7.6E-38 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 432 | 491 | 4.9E-40 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 427 | 492 | 38.400002 | IPR003657 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 719 | 1003 | 45.262028 | IPR000719 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 243 | 307 | 24.592686 | IPR003657 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 839 | 851 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 725 | 748 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 363 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39420.1 | CDC2C. | 0 |
| RefSeq | NP_001288975.1 | probable WRKY transcription factor 58 [Brassica rapa] | 0 |
| B5X564 | Cyclin-dependent kinase C-2 C OS=Arabidopsis thaliana OX=3702 GN=CDC2C PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2N371 | WRKY domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS445263 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology