halophFGD

Basic Information

Locus ID: nbisL1-mrna-2928

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: RWP-RK domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
002179F_pilon	58010	60781	+	nbisL1-mrna-2928

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.73	39,388.53 Da	60.26	81.95	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02042	RWP-RK domain	232	279	8.1E-20	IPR003035
ProSiteProfiles	PS51519	RWP-RK domain profile.	214	299	18.928602	IPR003035
MobiDBLite	mobidb-lite	consensus disorder prediction	198	225	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	202	225	-	-
Coils	Coil	Coil	276	303	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G35590.2	-
RefSeq	XP_021603605.1	protein RKD5 isoform X1 [Manihot esculenta]
Swiss-Prot	O81791	Protein RKD5 OS=Arabidopsis thaliana OX=3702 GN=RKD5 PE=3 SV=1
TrEMBL	A0A251LH93	RWP-RK domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_02G113900 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg10266, jg13128, jg1682, jg1683, jg23974, jg25754, jg33924
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13130, gene_13367, gene_3350
Amaranthaceae	Atriplex hortensis	2	Ah018598, Ah034475
Amaranthaceae	Beta vulgaris	3	BVRB_2g034080, BVRB_2g034090, BVRB_5g114720
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg15061, Sbi_jg20307, Sbi_jg20309, Sbi_jg31122 ... Sbi_jg55874
Amaranthaceae	Salicornia europaea	3	Seu_jg17212, Seu_jg25767, Seu_jg26373
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004634, GOSA_00009050, GOSA_00020091
Amaranthaceae	Suaeda glauca	5	Sgl01308, Sgl06388, Sgl43130, Sgl63625, Sgl68120
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000001927, gene:ENSEOMG00000007117 ... gene:ENSEOMG00000024788, gene:ENSEOMG00000046761
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0013700, CQ.Regalona.r1.2BG0015820 ... CQ.Regalona.r1.3AG0005270, CQ.Regalona.r1.3BG0005370, CQ.Regalona.r1.5AG0020630, CQ.Regalona.r1.5BG0022020
Anacardiaceae	Pistacia vera	2	pistato.v30144110, pistato.v30261080
Apiaceae	Apium graveolens	7	Ag10G00091, Ag10G02510, Ag4G00361, Ag5G00612, Ag7G00405 ... Ag7G00406, Ag9G00715
Arecaceae	Cocos nucifera	5	COCNU_02G012730, COCNU_06G002560, COCNU_10G008890 ... scaffold004312G000060, scaffold014789G000020
Arecaceae	Phoenix dactylifera	9	gene-LOC103708559, gene-LOC103719042, gene-LOC103723984 ... gene-LOC108511736, gene-LOC113462385, gene-LOC113463337, gene-LOC120105511, gene-LOC120110775, gene-LOC120112229
Asparagaceae	Asparagus officinalis	4	AsparagusV1_03.1219.V1.1, AsparagusV1_03.30.V1.1 ... AsparagusV1_05.2067.V1.1, AsparagusV1_06.464.V1.1
Asteraceae	Flaveria trinervia	4	Ftri16G07380, Ftri18G27670, Ftri18G29740, Ftri6G08849
Brassicaceae	Arabidopsis thaliana	6	AT1G18790.1, AT1G74480.1, AT4G35590.1, AT5G16100.1 ... AT5G53040.1, AT5G66990.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10005560m.g.v1.0, Thhalv10009656m.g.v1.0 ... Thhalv10009845m.g.v1.0, Thhalv10013525m.g.v1.0, Thhalv10015321m.g.v1.0, Thhalv10019554m.g.v1.0, Thhalv10027037m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g16770.v2.2, Sp2g29670.v2.2, Sp5g29660.v2.2 ... Sp6g15190.v2.2, Sp6g28040.v2.2, Sp7g33360.v2.2
Brassicaceae	Brassica nigra	11	BniB02g031140.2N, BniB02g046630.2N, BniB02g046650.2N ... BniB03g007830.2N, BniB03g007850.2N, BniB03g052990.2N, BniB05g002840.2N, BniB05g022840.2N, BniB05g071290.2N, BniB06g014990.2N, BniB07g043850.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1767, Ceq09G1615
Casuarinaceae	Casuarina glauca	2	Cgl04G1944, Cgl06G0057
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno01g11290, gene.Cymno03g10810, gene.Cymno06g03950 ... gene.Cymno11g05650, gene.Cymno11g05660
Dunaliellaceae	Dunaliella salina	6	Dusal.0149s00011.v1.0, Dusal.0273s00002.v1.0 ... Dusal.0487s00007.v1.0, Dusal.0785s00002.v1.0, Dusal.0892s00002.v1.0, Dusal.0948s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g23780, gene.Thate03g15070, gene.Thate04g05750 ... gene.Thate07g06290
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10422, nbisL1-mrna-11557
Nitrariaceae	Nitraria sibirica	3	evm.TU.Contig5.8, evm.TU.LG06.1218, evm.TU.LG10.953
Plantaginaceae	Plantago ovata	7	Pov_00010951, Pov_00013415, Pov_00018923, Pov_00031170 ... Pov_00031171, Pov_00031179, Pov_00031246
Plumbaginaceae	Limonium bicolor	8	Lb0G38308, Lb1G04154, Lb1G04156, Lb1G04157, Lb1G07818 ... Lb2G09383, Lb3G21320, Lb6G29753
Poaceae	Echinochloa crus-galli	17	AH02.2005, AH05.495, AH06.907, AH07.3459, AH09.1932 ... AH09.1933, BH02.2052, BH06.940, BH07.3288, BH09.2098, BH09.2099, CH02.2225, CH05.616, CH06.1034, CH07.3341, CH09.2242, CH09.2243
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_1AG0020620, gene-QOZ80_1BG0070490 ... gene-QOZ80_2BG0200960, gene-QOZ80_2BG0201060, gene-QOZ80_4AG0307280, gene-QOZ80_4BG0338320, gene-QOZ80_5AG0386170, gene-QOZ80_5BG0433290, gene-QOZ80_5BG0433300
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0187910.1, HORVU.MOREX.r3.2HG0187920.1 ... HORVU.MOREX.r3.6HG0615300.1, HORVU.MOREX.r3.7HG0656970.1, HORVU.MOREX.r3.7HG0666570.1, HORVU.MOREX.r3.7HG0740630.1
Poaceae	Lolium multiflorum	5	gene-QYE76_016950, gene-QYE76_024872, gene-QYE76_028900 ... gene-QYE76_045576, gene-QYE76_053290
Poaceae	Oryza coarctata	8	Oco01G012460, Oco02G012590, Oco03G021490, Oco04G022120 ... Oco07G013190, Oco08G012760, Oco12G005920, Oco24G003490
Poaceae	Oryza sativa	5	LOC_Os01g37100.1, LOC_Os02g51090.1, LOC_Os04g26080.1 ... LOC_Os04g47640.1, LOC_Os12g12970.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G163000, gene-BS78_04G277300, gene-BS78_K017500 ... gene-BS78_06G191800, gene-BS78_10G095900
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0106254, Pt_Chr0106259, Pt_Chr0203333, Pt_Chr0203356 ... Pt_Chr0301646
Poaceae	Sporobolus alterniflorus	16	Chr02G017900, Chr04G024110, Chr05G016120, Chr06G002380 ... Chr06G026470, Chr15G003710, Chr19G013810, Chr19G013820, Chr23G006460, Chr25G005390, Chr26G003090, Chr26G013000, Chr27G002000, Chr28G001470, Chr28G002380, Chr30G005240
Poaceae	Thinopyrum elongatum	7	Tel1E01G736000, Tel2E01G684400, Tel2E01G684500 ... Tel6E01G550300, Tel7E01G347400, Tel7E01G849300, Tel7E01G850000
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG058430, gene_TRIDC2AG058460 ... gene_TRIDC2BG061400, gene_TRIDC2BG061420
Poaceae	Triticum aestivum	15	TraesCS2A02G404400.1, TraesCS2A02G404500.1 ... TraesCS2B02G422300.1, TraesCS2B02G422400.1, TraesCS2D02G401300.1, TraesCS2D02G401400.2, TraesCS6A02G307500.1, TraesCS6A02G307600.1, TraesCS6B02G336100.1, TraesCS6B02G336200.1, TraesCS6D02G286800.1, TraesCS7A02G135900.1, TraesCS7A02G188400.1, TraesCS7A02G497400.1, TraesCS7D02G189500.1
Poaceae	Zea mays	4	Zm00001eb073910_P001, Zm00001eb133740_P001 ... Zm00001eb254520_P001, Zm00001eb372360_P001
Poaceae	Zoysia japonica	10	nbis-gene-1138, nbis-gene-12324, nbis-gene-18956 ... nbis-gene-21433, nbis-gene-22553, nbis-gene-35127, nbis-gene-47368, nbis-gene-51396, nbis-gene-52022, nbis-gene-52023
Poaceae	Zoysia macrostachya	7	Zma_g10469, Zma_g14415, Zma_g18717, Zma_g24907, Zma_g25653 ... Zma_g29393, Zma_g8041
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.1561, evm.TU.LG01.2252, evm.TU.LG01.2636 ... evm.TU.LG14.1771, evm.TU.LG14.814
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g25320, gene.Posoc03g20880, gene.Posoc04g11590
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_10_RagTag.677, evm.TU.Scaffold_2_RagTag.1635 ... evm.TU.Scaffold_3_RagTag.34, evm.TU.Scaffold_4_RagTag.583, evm.TU.Scaffold_6_RagTag.2190
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-122, nbisL1-mrna-13814, nbisL1-mrna-13815 ... nbisL1-mrna-13816, nbisL1-mrna-166, nbisL1-mrna-16948, nbisL1-mrna-28786, nbisL1-mrna-3574
Rhizophoraceae	Ceriops tagal	8	nbisL1-mrna-12866, nbisL1-mrna-13030, nbisL1-mrna-20316 ... nbisL1-mrna-5912, nbisL1-mrna-5968, nbisL1-mrna-7433, nbisL1-mrna-8903, nbisL1-mrna-915
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-11647, nbisL1-mrna-12468, nbisL1-mrna-1765 ... nbisL1-mrna-19021, nbisL1-mrna-20707, nbisL1-mrna-8927, nbisL1-mrna-8928
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000008l.136, evm.TU.utg000009l.322 ... evm.TU.utg000011l.1342, evm.TU.utg000019l.1195, evm.TU.utg000033l.479
Rhizophoraceae	Kandelia obovata	2	Maker00006781, Maker00007141
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-15722, nbisL1-mrna-17082, nbisL1-mrna-17818 ... nbisL1-mrna-18287, nbisL1-mrna-22612, nbisL1-mrna-6604
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-1558, nbisL1-mrna-16781, nbisL1-mrna-2486 ... nbisL1-mrna-2928, nbisL1-mrna-8039
Salicaceae	Populus euphratica	5	populus_peu12598, populus_peu14023, populus_peu23227 ... populus_peu28008, populus_peu29456
Solanaceae	Lycium barbarum	7	gene-LOC132623285, gene-LOC132624413, gene-LOC132624787 ... gene-LOC132631204, gene-LOC132631463, gene-LOC132631464, gene-LOC132637450
Solanaceae	Solanum chilense	2	SOLCI001686600, SOLCI002556200
Solanaceae	Solanum pennellii	3	gene-LOC107013463, gene-LOC107028266, gene-LOC114076522
Zosteraceae	Zostera marina	3	Zosma01g00330.v3.1, Zosma03g17980.v3.1, Zosma04g04210.v3.1