Basic Information
Locus ID:
nbisL1-mrna-29273
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 42341623 | 42348649 | - | nbisL1-mrna-29273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 94,995.23 Da | 46.85 | 84.52 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 568 | 701 | 3.3746E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 570 | 700 | 2.4E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 723 | 758 | 2.8E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 529 | 763 | 6.54E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 529 | 701 | 4.2E-93 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 702 | 771 | 4.2E-93 | - |
| SMART | SM00382 | AAA_5 | 566 | 703 | 5.4E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 673 | 692 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 797 | - | - |
| Coils | Coil | Coil | 752 | 773 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021671422.1 | nuclear valosin-containing protein-like [Hevea brasiliensis] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A6MNZ1 | AAA domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_040026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology