Basic Information
Locus ID:
nbisL1-mrna-2922
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002177F_pilon | 6261242 | 6273491 | - | nbisL1-mrna-2922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 93,657.77 Da | 41.83 | 89.54 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2 | 169 | 1.65698E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 40 | 78 | 6.5E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 120 | 3.3E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 124 | 162 | 7.3E-8 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 679 | 748 | 2.2E-17 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2 | 36 | 1.4E-4 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 767 | 846 | 1.4E-18 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 279 | 1.22E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 94 | 1.2E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 95 | 173 | 2.8E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 39 | 78 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 123 | 162 | 1.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 81 | 120 | 3.8E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 36 | 0.31 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 130 | 171 | 16.055872 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 4 | 45 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 88 | 129 | 18.69591 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 130 | 165 | 12.762857 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 88 | 125 | 14.476484 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 46 | 80 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 46 | 87 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 4 | 41 | 11.681953 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 149 | 163 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 107 | 121 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 107 | 121 | 4.1E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 65 | 79 | 4.1E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 149 | 163 | 4.1E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 849 | 15.735866 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 376 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_024462636.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 [Populus trichocarpa] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M719 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology