Basic Information
Locus ID:
nbisL1-mrna-29200
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 41823332 | 41827803 | + | nbisL1-mrna-29200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 112,408.24 Da | 31.36 | 109.58 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 863 | 957 | 2.1E-13 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 75 | 3.7E-12 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 599 | 658 | 5.6E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 395 | 454 | 5.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 531 | 585 | 4.3E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 498 | 783 | 1.93E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 356 | 7.29E-44 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 841 | 964 | 1.54E-25 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 373 | 540 | 6.55E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 186 | 275 | 1.2E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 185 | 1.2E-35 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 821 | 934 | 2.4E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 369 | 491 | 2.3E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 276 | 368 | 9.8E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 492 | 790 | 2.9E-81 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 963 | 1030 | 8.3E-6 | - |
| SMART | SM00365 | LRR_sd22_2 | 719 | 745 | 140.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 101 | 127 | 140.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 621 | 637 | 170.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 549 | 575 | 76.0 | - |
| SMART | SM00369 | LRR_typ_2 | 199 | 223 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 247 | 271 | 170.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 417 | 438 | 180.0 | - |
| SMART | SM00369 | LRR_typ_2 | 695 | 719 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 417 | 441 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 151 | 175 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 549 | 572 | 9.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 597 | 620 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 318 | 342 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 621 | 645 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 101 | 125 | 92.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 859 | 1030 | 12.937571 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 865 | 887 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 621 | 634 | 9.3E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 552 | 565 | 9.3E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_024442023.1 | - | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835JIS3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |