Basic Information
Locus ID:
nbisL1-mrna-29198
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 41804494 | 41809345 | + | nbisL1-mrna-29198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 55,376.62 Da | 42.70 | 79.24 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 112 | 130 | 0.016 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 207 | 9.4E-5 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 221 | 249 | 5.0E-5 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 9.9E-12 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 3.64E-47 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 375 | 1.96E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 377 | 1.3E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 147 | 270 | 6.2E-22 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 146 | 1.4E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 1.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 5.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 5.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.47 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 1.4E-4 | IPR002110 |
| SMART | SM00184 | ring_2 | 319 | 368 | 4.4E-4 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 11.327209 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 10.4977 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.720098 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.071245 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 10.158304 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.18518 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 10.68342 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.73634 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 246 | 10.71288 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 484 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021592769.1 | E3 ubiquitin-protein ligase XBAT33 [Manihot esculenta] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LD08 | Uncharacterized protein MANES_14G027900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology