Basic Information
Locus ID:
nbisL1-mrna-29176
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 41601766 | 41604533 | - | nbisL1-mrna-29176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 47,518.26 Da | 34.57 | 74.26 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 180 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 340 | 0.0079 | IPR001680 |
| Pfam | PF18345 | Zinc finger domain | 116 | 134 | 4.5E-8 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 301 | 0.0096 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 143 | 429 | 5.22E-47 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 111 | 135 | 1.83E-7 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 345 | 437 | 2.7E-5 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 110 | 134 | 1.4E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 200 | 2.3E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 201 | 344 | 9.1E-24 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 9 | 67 | 8.5E-6 | - |
| SMART | SM00320 | WD40_4 | 220 | 257 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 341 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 388 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 301 | 1.8E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 30 | 55 | 0.22 | IPR000571 |
| SMART | SM00320 | WD40_4 | 141 | 180 | 2.6E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 112 | 136 | 4.0E-6 | IPR000571 |
| SMART | SM00320 | WD40_4 | 391 | 428 | 19.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 148 | 189 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 110 | 137 | 15.609943 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 310 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 304 | 9.256512 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 30 | 56 | 9.929538 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 148 | 180 | 10.363778 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 288 | 302 | 6.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 167 | 181 | 6.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 328 | 342 | 6.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 78 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021615892.1 | zinc finger CCCH domain-containing protein 48 isoform X2 [Manihot esculenta] | 0 |
| Q9FNZ1 | Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=ZFWD2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M7Y4 | Uncharacterized protein MANES_06G142500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology