Basic Information
Locus ID:
nbisL1-mrna-29013
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 40351798 | 40353103 | - | nbisL1-mrna-29013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 38,502.64 Da | 46.20 | 88.59 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 271 | 310 | 2.9E-8 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 77 | 9.68E-7 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 265 | 314 | 8.02E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 77 | 201 | 1.11E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 261 | 316 | 7.8E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 62 | 256 | 4.3E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 268 | 310 | 11.084142 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_050220680.1 | - | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2QN35 | MYND-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology