Basic Information
Locus ID:
nbisL1-mrna-2895
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 1304432 | 1314435 | + | nbisL1-mrna-2895 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 124,740.24 Da | 42.14 | 81.17 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 481 | 0.067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 912 | 945 | 0.0092 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 372 | 0.23 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 328 | 558 | 1.34E-25 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 563 | 795 | 2.2E-7 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 486 | 1042 | 1.02E-40 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 384 | 1.3E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 964 | 1103 | 8.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 407 | 671 | 5.0E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 749 | 963 | 3.8E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 6.1E-5 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.6E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 573 | 614 | 0.73 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 434 | 20.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.5E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 440 | 481 | 6.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 483 | 524 | 0.02 | IPR001680 |
| SMART | SM00320 | WD40_4 | 825 | 860 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 373 | 5.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1060 | 1092 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 995 | 1037 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 527 | 570 | 160.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 954 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.999054 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.322113 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 340 | 382 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 592 | 623 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 948 | 9.889235 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021645875.1 | topless-related protein 3-like [Hevea brasiliensis] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MSJ5 | Topless-related protein 3 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology