Basic Information
Locus ID:
nbisL1-mrna-28846
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING/Ubox like zinc-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 39102881 | 39104737 | + | nbisL1-mrna-28846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 38,771.45 Da | 69.36 | 57.21 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16618 | mRING-HC-C4C4_CNOT4 | 280 | 323 | 3.49478E-18 | IPR039515 |
| Pfam | PF14570 | RING/Ubox like zinc-binding domain | 280 | 326 | 3.5E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 332 | 1.31E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 272 | 338 | 8.9E-18 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 280 | 322 | 8.919052 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 197 | - | - |
| Coils | Coil | Coil | 77 | 97 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021671294.1 | uncharacterized protein LOC110658113 [Hevea brasiliensis] | 0 |
| Q09818 | Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2KQL4 | RING-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13069, jg18673, jg25811 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13728, gene_16578 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah001082, Ah007669, Ah032411, Ah035419, Ah036565 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g026030, BVRB_5g116020 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24662, Sbi_jg30449, Sbi_jg58797, Sbi_jg8520 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20072, Seu_jg28668 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00015018, GOSA_00016287 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51090, Sgl56396, Sgl62609, Sgl67156 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007972, gene:ENSEOMG00000017821 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0018130, CQ.Regalona.r1.2AG0019930 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30021860, pistato.v30138500 |
| Apiaceae | Apium graveolens | 7 | Ag10G00132, Ag4G00318, Ag4G00826, Ag5G00649, Ag5G00650 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G009960, contig69653048G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713857 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.178.V1.1, AsparagusV1_05.3170.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri16G00889, Ftri18G08513, Ftri1G05278, Ftri2G22365 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G74870.1, AT3G48070.2, AT5G62910.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004568m.g.v1.0, Thhalv10010506m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g26050.v2.2, Sp5g13940.v2.2, Sp5g30000.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB03g053260.2N, BniB04g002020.2N, BniB05g052510.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1773, Ceq04G1859 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1831, Cgl04G2036 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g01890 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1227s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g26120, gene.Thate04g08820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10804, nbisL1-mrna-10805 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.451, evm.TU.LG10.826 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028904 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G02757, Lb4G26207, Lb5G27825, Lb6G29745, Lb6G29752 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1267, BH09.1379, CH09.1485 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0314640, gene-QOZ80_4BG0345690 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0173710.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023226, gene-QYE76_044421 |
| Poaceae | Oryza coarctata | 4 | Oco03G013650, Oco04G012710, Oco07G007830, Oco08G007730 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g37030.1, LOC_Os04g38970.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G124600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204337, Pt_Chr0302430, Pt_Chr0302459 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G011390, Chr25G008490, Chr26G008160, Chr30G008350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G571800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG047860, gene_TRIDC2BG050360 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G336300.1, TraesCS2B02G345600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb080490_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-53727, nbis-gene-7479 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19857, Zma_g21413 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2552, evm.TU.LG02.874, evm.TU.LG05.861 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g04220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.965, evm.TU.Scaffold_4_RagTag.519 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14648, nbisL1-mrna-28846 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20369 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12536, nbisL1-mrna-1816 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.334, evm.TU.utg000010l.76 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000855, Maker00008599 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14572, nbisL1-mrna-782 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1502, nbisL1-mrna-8608 |
| Salicaceae | Populus euphratica | 3 | populus_peu28570, populus_peu29992, populus_peu30034 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132601210, gene-LOC132632717 |
| Solanaceae | Solanum chilense | 2 | SOLCI003430400, SOLCI007002200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014856, gene-LOC107021080 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.14372_chr08_+, STRG.15455_chr06_-, gene_11786 |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G0047, TC05G1778, TC09G1485 |
| Zosteraceae | Zostera marina | 2 | Zosma01g25600.v3.1, Zosma02g25050.v3.1 |