Basic Information
Locus ID:
nbisL1-mrna-28832
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 38980453 | 38988384 | - | nbisL1-mrna-28832 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 127,956.17 Da | 49.41 | 87.94 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 593 | 737 | 5.11769E-17 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1004 | 1047 | 5.93548E-22 | - |
| CDD | cd12108 | Hr-like | 40 | 192 | 2.27743E-13 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 598 | 738 | 7.2E-6 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1052 | 1109 | 4.0E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1003 | 1047 | 3.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 986 | 1052 | 6.03E-14 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1076 | 1111 | 2.3E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 587 | 759 | 5.6E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 117 | 197 | 2.0E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 998 | 1049 | 5.1E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 1005 | 1046 | 5.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1005 | 1047 | 12.489278 | IPR001841 |
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 884 | 914 | 8.64193 | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021665983.1 | zinc finger protein BRUTUS-like At1g18910 [Hevea brasiliensis] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K1XJ24 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology