Basic Information
Locus ID:
nbisL1-mrna-2877
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 5743942 | 5745039 | + | nbisL1-mrna-2877 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 42,600.40 Da | 50.52 | 87.86 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 22 | 63 | 1.3E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 115 | 1.44E-8 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 80 | 346 | 6.93E-21 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 61 | 9.1E-6 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 70 | 356 | 1.1E-12 | IPR015915 |
| SMART | SM00256 | fbox_2 | 25 | 65 | 2.0E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 64 | 10.371784 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15710.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_015880513.1 | F-box/kelch-repeat protein At5g15710 [Ziziphus jujuba var. spinosa] | 0 |
| Q9LFV5 | F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana OX=3702 GN=At5g15710 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067JK19 | F-box domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_25617 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg32924, jg40151 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24251 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035641 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21686, Sbi_jg22126 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16056 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008677 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62943, Sgl67573 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017723, gene:ENSEOMG00000020475 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017960, CQ.Regalona.r1.2BG0019490 |
| Apiaceae | Apium graveolens | 2 | Ag5G00114, AgUnG00177 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G006110, COCNU_11G011490 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702396, gene-LOC103712753 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1416.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G07954, Ftri6G01761 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013540m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28420.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g007530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0525 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0482 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07340 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g20650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.351 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028102 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2613, BH09.2875, CH09.3083 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300150, gene-QOZ80_4BG0330880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0208870.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047210 |
| Poaceae | Oryza coarctata | 2 | Oco07G018680, Oco08G017970 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57290.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G275900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300336, Pt_Chr0300371 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001480, Chr26G017820, Chr30G001110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G920600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG075380, gene_TRIDC2BG082480 |
| Poaceae | Triticum aestivum | 1 | TraesCS2D02G541700.1.cds1 |
| Poaceae | Zea mays | 3 | Zm00001eb036100_P001, Zm00001eb036110_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6136 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22179 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.711, evm.TU.LG25.611 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14580 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.771, evm.TU.Scaffold_3_RagTag.1677 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15322, nbisL1-mrna-1975, nbisL1-mrna-2121 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12346, nbisL1-mrna-15769, nbisL1-mrna-1846 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2877, nbisL1-mrna-361 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.117, add.evm.TU.utg000019l.100 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007367 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18854, nbisL1-mrna-22314 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13041, nbisL1-mrna-3779 |
| Salicaceae | Populus euphratica | 3 | populus_peu09429, populus_peu09432, populus_peu25082 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622604 |
| Solanaceae | Solanum chilense | 1 | SOLCI003995500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008841 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2116_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0117, TC05G1342 |