Basic Information
Locus ID:
nbisL1-mrna-2864
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 27944202 | 27947325 | + | nbisL1-mrna-2864 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 53,964.56 Da | 54.31 | 83.90 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 303 | 382 | 1.48906E-40 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 309 | 354 | 9.8E-10 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 27 | 211 | 6.5E-55 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 305 | 369 | 2.62E-17 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 303 | 372 | 7.8E-16 | IPR036638 |
| SMART | SM00353 | finulus | 311 | 360 | 5.8E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 305 | 354 | 16.653255 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 402 | - | - |
| Coils | Coil | Coil | 344 | 382 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46760.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_039048194.1 | transcription factor MYC2-like [Hibiscus syriacus] | 0 |
| Q9FIP9 | Transcription factor MYC3 OS=Arabidopsis thaliana OX=3702 GN=MYC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XZU4 | BHLH domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116951pilonHSYRG00348 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology