Basic Information
Locus ID:
nbisL1-mrna-28621
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 37217881 | 37223470 | + | nbisL1-mrna-28621 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 44,916.95 Da | 45.31 | 61.83 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16481 | RING-H2_TTC3 | 350 | 392 | 2.17563E-17 | - |
| Pfam | PF13639 | Ring finger domain | 350 | 392 | 8.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 344 | 394 | 8.01E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 332 | 397 | 9.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 351 | 391 | 1.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 351 | 392 | 12.946621 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 159 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021666522.1 | uncharacterized protein LOC110654736 [Hevea brasiliensis] | 0 |
| Q9FMM4 | Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KB56 | Uncharacterized protein MANES_01G015300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg18854, jg19326, jg19339, jg26988, jg5233, jg7284 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_19958, gene_20555, gene_26572 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002336 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg32117, Sbi_jg46130, Sbi_jg57255 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21283, Seu_jg24997 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00021800 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl53925, Sgl55733, Sgl59254 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004544, gene:ENSEOMG00000022429 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0015200, CQ.Regalona.r1.5BG0016370 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30146950, pistato.v30206160 |
| Apiaceae | Apium graveolens | 2 | Ag7G01222, AgUnG00417 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G008940, COCNU_14G005950 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709314, gene-LOC103721561 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3160.V1.1, AsparagusV1_05.1109.V1.1 |
| Asteraceae | Flaveria trinervia | 7 | Ftri11G27636, Ftri15G03187, Ftri15G33113, Ftri17G20886 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17970.1, AT1G73760.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007935m.g.v1.0, Thhalv10018747m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g16030.v2.2, Sp5g28950.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g007390.2N, BniB03g038730.2N, BniB03g052150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2449 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2593 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g09040, gene.Cymno11g01540 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g27510, gene.Thate03g00810 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG09.50, evm.TU.LG10.295 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000801, Pov_00033297 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G16374, Lb3G16375, Lb8G36582 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2827, BH02.2924, BH05.1669, CH02.3623, CH05.1889 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0029400, gene-QOZ80_1BG0079570 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0083630.1, HORVU.MOREX.r3.3HG0281540.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015605, gene-QYE76_054691 |
| Poaceae | Oryza coarctata | 3 | Oco01G017890, Oco02G018070, Oco09G015990 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g49770.1, LOC_Os05g47670.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G240100, gene-BS78_09G215900 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503717, Pt_Chr0602431 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G015150, Chr02G012130, Chr03G013970, Chr05G021500 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G610200, Tel3E01G434900, Tel7E01G398600 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG054910, gene_TRIDC1BG062890 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G373200.1, TraesCS1B02G393400.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb156060_P001, Zm00001eb294850_P003 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-12626, nbis-gene-13756, nbis-gene-24950 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g10934, Zma_g27325, Zma_g28732, Zma_g8466 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2276, evm.TU.LG08.870, evm.TU.LG14.1451 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02530 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.700, evm.TU.Scaffold_4_RagTag.733 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-13156, nbisL1-mrna-14325, nbisL1-mrna-25569 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13649, nbisL1-mrna-4654 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12312, nbisL1-mrna-1636 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.14, evm.TU.utg000008l.475 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001479, Maker00009034 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14428, nbisL1-mrna-965 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19228, nbisL1-mrna-8368 |
| Salicaceae | Populus euphratica | 3 | populus_peu28301, populus_peu28464, populus_peu29756 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132601760, gene-LOC132603574, gene-LOC132615717 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI003850200, SOLCI004339800, SOLCI006090600 |
| Solanaceae | Solanum pennellii | 9 | gene-LOC107005815, gene-LOC107005845, gene-LOC107006294 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11670 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1091 |
| Zosteraceae | Zostera marina | 2 | Zosma03g01230.v3.1, Zosma06g06680.v3.1 |