Basic Information
Locus ID:
nbisL1-mrna-28607
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ubiquitin protein ligase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 37110540 | 37117866 | - | nbisL1-mrna-28607 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 136,313.41 Da | 50.72 | 77.63 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1011 | 1054 | 4.52491E-16 | - |
| CDD | cd12108 | Hr-like | 211 | 339 | 1.03781E-17 | - |
| CDD | cd12108 | Hr-like | 2 | 75 | 1.25026E-14 | - |
| CDD | cd12108 | Hr-like | 558 | 699 | 1.06929E-30 | - |
| Pfam | PF05495 | CHY zinc finger | 883 | 958 | 2.6E-17 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 207 | 341 | 4.7E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 556 | 700 | 1.7E-9 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 877 | 939 | 1.05E-15 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 949 | 1005 | 2.62E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1011 | 1057 | 1.26E-7 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 212 | 357 | 4.2E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 551 | 767 | 3.5E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1006 | 1056 | 5.8E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 2 | 95 | 2.0E-15 | - |
| SMART | SM00184 | ring_2 | 1012 | 1053 | 2.7E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 876 | 945 | 24.402605 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 948 | 1011 | 29.54089 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1012 | 1054 | 11.07299 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021653205.1 | - | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | B9T628 | Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1197660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology