Basic Information
Locus ID:
nbisL1-mrna-28605
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 37096142 | 37102990 | + | nbisL1-mrna-28605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 60,218.19 Da | 58.55 | 75.69 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 361 | 536 | 3.55341E-109 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 359 | 465 | 7.0E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 17 | 108 | 6.5E-12 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 361 | 491 | 4.18E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 344 | 536 | 7.4E-72 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 124 | 6.0E-32 | - |
| SMART | SM00232 | pad1_6 | 361 | 489 | 1.9E-19 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 362 | 492 | 32.343288 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 292 | - | - |
| Coils | Coil | Coil | 97 | 117 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_012093028.1 | AMSH-like ubiquitin thioesterase 1 [Jatropha curcas] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M3F9 | AMSH-like ubiquitin thioesterase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology