Basic Information
Locus ID:
nbisL1-mrna-28562
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 36730203 | 36731127 | + | nbisL1-mrna-28562 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 20,662.18 Da | 24.89 | 86.65 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 89 | 147 | 1.45806E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 13 | 75 | 1.7E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 88 | 147 | 2.3E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 7 | 147 | 7.47E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 149 | 5.0E-42 | - |
| SMART | SM00054 | efh_1 | 50 | 78 | 8.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 89 | 117 | 2.3E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 125 | 155 | 0.0023 | IPR002048 |
| SMART | SM00054 | efh_1 | 14 | 42 | 0.43 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 85 | 120 | 14.820255 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 10 | 45 | 12.811786 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 121 | 156 | 11.193852 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 46 | 81 | 9.129593 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 98 | 110 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 23 | 35 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 134 | 146 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 59 | 71 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_016713052.1 | - | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7J9KIN0 | Calcium-binding protein CML15 (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_000198 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology