Basic Information
Locus ID:
nbisL1-mrna-285
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
pentatricopeptide repeat-containing protein At5g08310
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000003F_pilon | 1579837 | 1582371 | + | nbisL1-mrna-285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 95,278.17 Da | 33.35 | 101.21 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 602 | 651 | 6.2E-17 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 208 | 236 | 0.029 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 381 | 406 | 0.12 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 242 | 271 | 0.0024 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 141 | 165 | 0.19 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 431 | 459 | 8.0E-4 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 672 | 721 | 3.8E-13 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 732 | 777 | 3.9E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 462 | 511 | 5.7E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 281 | 321 | 1.4E-7 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 215 | 342 | 4.45E-7 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 530 | 596 | 1.3E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 597 | 664 | 1.9E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 380 | 529 | 2.9E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 239 | 377 | 2.0E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 73 | 238 | 4.1E-25 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 665 | 825 | 4.1E-29 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 277 | 309 | 8.7E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 640 | 674 | 2.3E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 572 | 603 | 0.0013 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 500 | 533 | 4.1E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 431 | 463 | 9.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 312 | 345 | 5.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 466 | 498 | 7.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 605 | 638 | 3.5E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 241 | 274 | 1.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 676 | 708 | 5.1E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 207 | 237 | 1.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 710 | 744 | 1.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 381 | 412 | 6.2E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 463 | 497 | 11.114816 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 309 | 343 | 10.742131 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 428 | 462 | 11.531345 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 638 | 672 | 12.616514 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 603 | 637 | 12.75901 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 743 | 777 | 10.084454 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 673 | 707 | 12.079411 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 708 | 742 | 10.994242 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 498 | 532 | 9.251395 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 274 | 308 | 12.002681 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 205 | 235 | 8.681407 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 239 | 273 | 9.744654 | IPR002885 |
| Coils | Coil | Coil | 256 | 276 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08310.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_024456892.2 | putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Populus trichocarpa] | 0 |
| P0C8Q6 | Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7ZWH4 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_018974 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18500 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25362 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038576 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202760 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14693, Sbi_jg55458, Sbi_jg55459 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26020 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012506 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78064, Sgl80568 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0021580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225040 |
| Apiaceae | Apium graveolens | 1 | Ag8G01964 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712455 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1163.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G08846 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015588m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g34640.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g027900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0535 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0558 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2872 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16515 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0377900, gene-QOZ80_5BG0425020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0662080.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_010760, gene-QYE76_010824 |
| Poaceae | Oryza coarctata | 1 | Oco10G006600 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g24930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K281200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G014780, Chr12G014790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G330600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG020010, gene_TRIDC7BG010020 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G161600.1.cds1, TraesCS7B02G066700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb009120_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43398 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1490, evm.TU.LG26.176 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.336 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15193 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19832 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-285 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.78 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007627 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21430 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17284 |
| Salicaceae | Populus euphratica | 1 | populus_peu13919 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613765 |
| Solanaceae | Solanum chilense | 1 | SOLCI002282700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016104 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20690_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0844 |