Basic Information
Locus ID:
nbisL1-mrna-2849
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 27240826 | 27248060 | - | nbisL1-mrna-2849 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 111,314.33 Da | 47.29 | 104.41 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 264 | 305 | 2.41324E-20 | - |
| Pfam | PF04564 | U-box domain | 264 | 330 | 5.3E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 876 | 996 | 3.28E-12 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 332 | 9.59E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 338 | 913 | 1.07E-33 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 862 | 1002 | 2.1E-12 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 13 | 127 | 6.5E-6 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 634 | 850 | 1.5E-24 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 240 | 336 | 7.4E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 337 | 633 | 3.2E-32 | IPR011989 |
| SMART | SM00185 | arm_5 | 406 | 446 | 280.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 799 | 839 | 6.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 750 | 796 | 29.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 917 | 957 | 0.23 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 263 | 326 | 1.4E-25 | IPR003613 |
| SMART | SM00185 | arm_5 | 364 | 404 | 21.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 571 | 613 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 530 | 570 | 24.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 873 | 913 | 46.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 259 | 333 | 34.446922 | IPR003613 |
| Coils | Coil | Coil | 66 | 86 | - | - |
| Coils | Coil | Coil | 194 | 221 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_039048355.1 | U-box domain-containing protein 44-like [Hibiscus syriacus] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XZT8 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116951pilonHSYRG00329 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |